NoFold: RNA structure clustering without folding or alignment

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FIGURE 5.
FIGURE 5.

Consensus structures of motifs that are enriched in dendritically localized transcripts. (A) A motif (M3) found within dendritic introns with high sequence and structure similarity to the ID element hairpin (inset). (B) Two motifs (M39 and M103) with high average Z-scores for the K10 localization element (K10_TLS, inset) (M39, Z = 5.80; M103, Z = 5.47). Although sequence homology with K10_TLS was low, these motifs share the high AU content characteristic of K10_TLS. (C) Two examples of potentially novel structure motifs (M158, M172) found in dendritic 3′ UTRs.

This Article

  1. RNA 20: 1671-1683