ePAT: A simple method to tag adenylated RNA to measure poly(A)-tail length and other 3′ RACE applications

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FIGURE 4.
FIGURE 4.

The cytoplasmic poly(A)-polymerase Gld-2 is required for normal adenylation of transcripts in the C. elegans germline. The adenylation state of four maternal mRNA egg-1, Pup-2, oma-2, and gpd-4 was analyzed in Bristol Normal (N2) and gld-2 mutant worms. In each case, the mRNA is short-tailed in the mutant, which reflects the inactive state. The adenylation state of the somatic transcript gpd-2 is not affected in a major way by the loss of Gld-2. Yeast total RNA (800 ng) from a deadenylase-deficient mutant (pan2Δ/ccr4-1) was spiked into the assay as ballast for the low concentration of worm RNA (200 ng). The yeast APQ12 panel is included to demonstrate equal ePAT efficiency across samples.

This Article

  1. RNA 18: 1289-1295