Deep-sequencing of endothelial cells exposed to hypoxia reveals the complexity of known and novel microRNAs

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FIGURE 4.
FIGURE 4.

Pipeline of genome mapping. Flowchart describing data analysis pipeline designed for the identification of novel potential miRNA candidates. Numbers in italics indicate the amount of remaining reads/hits/miRNAs after each filtering step, averaged across all four libraries. Filtering threshold for alignment length was set at ≥19 nt, allowing not more than one mismatch and one sequencing error. After final overlap with a hairpin prediction database, more than 270,000 hits remained, representing 511 candidates for putative novel miRNA locations.

This Article

  1. RNA 18: 472-484