Predicting structures and stabilities for H-type pseudoknots with interhelix loops

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FIGURE 7.
FIGURE 7.

The density plots and the predicted structures for the 67-nt 5′ VMV pseudoknot at different temperatures. Stem S1 is the most stable stem, which is the last one to be unzipped. At T = 37°C, our predicted structure shows the highest SE = 1.0 and SP = 1.0 as tested against the experimental structure (Pennell et al. 2008).

This Article

  1. Published in Advance February 23, 2009, doi: 10.1261/rna.1429009 RNA 15: 696-706

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